Publications

2016

  1. Kuipers HF, Rieck M, Gurevich I, Nagy N, Butte MJ, Negrin RS, Wight TN, Steinman L, Bollyky PL. Hyaluronan synthesis is necessary for autoreactive T-cell trafficking, activation, and Th1 polarization. PNAS. 2016 Feb 2;113(5):1339-44. Epub 2016 Jan 19. PMID: 26787861.
  2. Wang A*, Vijayraghavan K*, Solgaard O, Butte MJ. Fast Stiffness Mapping of Cells Using High-Bandwidth Atomic Force Microscopy. ACS Nano. 2016 Jan 26;10(1):257-64. Epub 2015 Dec 15. PMID: 26554581.
  3. Rael E, Rakszawski L, Koller K, Bayerl M, Butte MJ, Zheng H. Treatment with rituximab and brentuximab vedotin in a patient of common variable immune deficiency-associated classic Hodgkin lymphoma. Biomarker Research. 2016, In press.
  4. Han LH, Conrad B, Chung MT, Deveza L, Jiang X, Wang A, Butte MJ, Longaker MT, Wan D, Yang F. Microribbon-based hydrogels accelerate stem cell-based bone regeneration in a mouse critical-size cranial defect model. J Biomed Mater Res A. 2016 Mar 17.
  5. Nam S, Hu KH, Butte MJ, Chaudhuri O. Strain-enhanced stress relaxation regulates nonlinear elasticity in biopolymer gels. PNAS. 2016, In press.
  6. Hu KH and Butte MJ. T cell activation requires force generation. J. Cell Biology. 2016, In press.

2015

  1. Mathieu A-L, ..., Butte MJ, ..., Belot A. PRKDC mutations associated with immunodeficiency, granuloma, and autoimmune regulator–dependent autoimmunity. In press (2015), J. Allergy and Clinical Immunology.
  2. Matthews AGW, Briggs CE, Yamanaka K, Small TN, Mooster JL, Bonilla FA, Oettinger MA, Butte MJ. Compound Heterozygous Mutation of Rag1 leading to Omenn Syndrome. PLoS ONE. 10(4): e0121489.
  3. Kanada M, Bachmann MH, Hardy JW, Bronsart L, Wang A, Frimannson DO, Sylvester MD, Schmidt TL, Kaspar RL, Butte MJ, Matin AC, Contag CH. Differential fates of biomolecules delivered to target cells via extracellular vesicles. PNAS. 112.12 (2015): E1433-E1442.
  4. Walter J, ..., Butte MJ, ... Notarangelo LD. Broad Spectrum Antibodies to Self-Antigens and Cytokines in RAG Deficiency. In press (2015), J. Clinical Investigation.
  5. Wei K*, Serpooshan V*, Metzler SE, Zhao M, Shah PB, Kim PJ, Savtchenko A, Wang A, Diez-Cunado M, Cai W, Wei K, Spiering S, Zhu W, Butte MJ, Yang P, Bernstein D, Mercola M, Ruiz-Lozano P. Engineered Epicardium Activates Cardiac Regeneration. In press, Nature (2015).

2014

  1. Serpooshan V, Zhao M, Metzler S, Weo K, Shah, PB, Wang, A, Mahmoudi M, Malkovskiy AV, Rajadas J, Butte MJ, Bernstein D, Ruiz-Lozano, P (2014). Use of bio-mimmetic 3D technology in therapeutics for heart disease. Bioengineered, 5(3), 0-1 (2014). PMID: 24637710.
  2. Hu KK, Bruce MA, Butte MJ. Spatiotemporally and mechanically controlled triggering of mast cells using atomic force microscopy. Immunol Res. 58(2-3):211-7 (May 2014). PMID: 24777418.
  3. Wang A, Butte MJ. Customized atomic force microscopy probe by focused-ion-beam-assisted tip transfer. Applied Physics Letters, 105(5):053101 (Aug 2014). PMID: 25161320.
  4. Burridge P, Metzler S, Nakayama K, Abilez O, Simmons C, Bruce M, Matsuura Y, Kim P, Wu J, Butte MJ, Huang N, Yang P. Multi-cellular interactions sustain long-term contractility of human pluripotent stem cell-derived cardiomyocytes. American Journal of Translational Research, 6(6):724-735 (Nov 2014).

2013

  1. Vijayraghavan K, Gellineau AA, Wang A, Butte MJ, Melosh NA, Solgaard O. Modeling, design, and fabrication of a high bandwidth AFM probe for imaging in air and water. J. Micromechanical Systems. 22(3):603-612. Jun 2013.
  2. Bruce MA, Butte MJ. Real-time GPU-based 3D Deconvolution. Optics Express. Vol. 21, Issue 4, pp. 4766-4773, Feb 2013. PMID 23482010.
  3. Vijayraghavan K, Wang A, Solgaard O, Butte MJ, Melosh NA. Measurement of Elastic Properties in Fluid Using High Bandwidth AFM Probes. Applied Physics Letters, 102, 103111 (2013).
  4. Sun W, Araci Z, Inayathullah M, Manickam S, Zhang X, Bruce MA, Marinkovich MP, Lane AT, Milla C, Rajadas J, Butte MJ. Polyvinylpyrrolidone microneedles enable delivery of intact proteins for diagnostic and therapeutic applications. Acta Biomaterialia, 9 (8), 7767-7774 (2013). PMID: 23648574.
  5. Serpooshan V, Wei K, Zhao M, Metzler SA, Shah PB, Wang A, Mahmoudi M, Butte MJ, Bernstein D, Ruiz-Lozano P. Bioengineered Acellular Collagen Patch Attenuates Cardiac Remodeling and Improves Ventricular Function post Myocardial Infarction. Biomaterials. 34.36: 9048-9055 (2013). PMID: 23992980.

2012

  1. LeBlanc J, Mueller AJ, Prinz A, Butte MJ. Optical Planar Waveguide for Cell Counting. Applied Physics Letters, 2012 Jan 23;100(4):43701-437015. PMID 22331960. Garcia D, Ghansah I, LeBlanc J, Butte MJ. Counting cells with a low-cost integrated microfluidics-waveguide sensor. Biomicrofluidics, 2012 Mar;6(1):14115-141154. Epub 2012 Mar 7. PMID 22454696.
  2. Ge X, Wang IE, Toma I, Sebastiano V, Liu J, Butte MJ, Reijo Pera R, Yang PC. Human amniotic mesenchymal stem cell-derived induced pluripotent stem cells may generate a universal source of cardiac cells. Stem Cells and Development. 2012 Oct 10;21(15):2798-808. doi: 10.1089/scd.2011.0435. Epub 2012 Jun 11. PMID 22530853.
  3. Sun N, Yazawa M, Navarrete EG, Sanchez-Freire V, Hu S, Wang L, Han L, Lee A, Abilez OJ, Pavlovic A, Liu J, Hajjar RJ, Dolmetsch RE, Butte MJ, Ashley EA, Longaker MT, Robbins RC, Wu JC. Patient-Specific Induced Pluripotent Stem Cell as A Model for Familial Dilated Cardiomyopathy. Science Translational Medicine, 2012 Apr 18;4(130):130ra47. PMID 22517884.
  4. Liu J, Sun N, Bruce MA, Wu JC, Butte MJ. Atomic Force Mechanobiology of Pluripotent Stem Cell-Derived Cardiomyocytes. PLoS ONE, 7(5):e37559. Epub 2012 May 18. PMID 22624048.
  5. Wang IN, Wang X, Ge X, Anderson J, Ho M, Ashley E, Liu J, Butte MJ, Yazawa M, Dolmetsch RE, Quertermous T, Yang PC Apelin enhances directed cardiac differentiation of mouse and human embryonic stem cells. PLoS ONE, 2012; 7(6): e38328. Epub 2012 Jun 1. PMID 22675543.
  6. Butte MJ*, Lee SJ*, Jesneck J, Keir ME, Haining WN, Sharpe AH. Sharpe CD28 costimulation regulates genome-wide effects on alternative splicing. PLoS ONE, 2012;7(6):e40032. Epub 2012 Jun 29. *co-first author. PMID 22768209
  7. Liu J, Butte MJ. Single Molecule Labeling of an AFM Cantilever Tip. Applied Physics Letters, 101, 163705 (Dec 2012). PMID 23152642.

2004-2010 (Manish Immunology Fellowship and Postdoc with George Whitesides and Arlene Sharpe at Harvard)

  1. Mack ET, Snyder PW; Perez-Castillejos R, Bilgicer B, Moustakas D, Butte MJ, Whitesides GM. Dependence of Avidity on Linker Length for a Bivalent Ligand-Bivalent Receptor Model System. J. American Chemical Society, 2012 Jan 11;134(1):333-45. Epub 2011 Dec 21. PMID 22088143.
  2. Butte MJ, Pena-Cruz V, Kim MJ, Freeman GJ, Sharpe AH. Interaction of Human PD-L1 and B7-1. Molecular Immunology, 2008 Aug; 45(13):3567-72. PMID 18585785. Reches M, Mirica KA, Dasgupta R, Dickey MD, Butte MJ, Whitesides GM. Thread as a matrix for biomedical assays. ACS Appl Mater Interfaces. 2010 Jun;2(6):1722-8. PMID: 20496913.
  3. McGuigan AP, Bruzewicz DA, Glavan A., Butte MJ, Whitesides GM. Cell encapsulation in sub-mm sized gel modules using replica molding. PLoS ONE. 2008 May 21;3(5):e2258. PMID 18493609.
  4. Martinez AW, Phillips ST, Butte MJ, Whitesides GM. Patterned paper as a platform for inexpensive, low-volume, portable bioassays. Angew Chem Int Ed Engl. 2007;46(8):1318-20. PMID 17211899.
  5. Butte MJ, Keir ME, Phamduy TB, Sharpe AH, Freeman GJ. Programmed death-1 ligand 1 interacts specifically with the B7-1 costimulatory molecule to inhibit T cell responses. Immunity. 2007;27(1):111-22. PMID 17629517.
  6. Grabie N, Gotsman I, DaCosta R, Pang H, Stavrakis G, Butte MJ, Keir ME, Freeman GJ, Sharpe AH, Lichtman AH. Endothelial programmed death-1 ligand 1 (PD-L1) regulates CD8+ T-cell mediated injury in the heart. Circulation. 2007;116(18):2062-71. PMID 17938288.
  7. Butte MJ*, Haines C*, Bonilla FA, Puck J. IL-7 receptor deficient SCID with a unique intronic mutation and post-transplant autoimmunity due to chronic GVHD. Clinical Immunology. 2007;125(2):159-64. *co-first author. PMID 17827065.
  8. Kobayashi N, Karisola P, Peña-Cruz V, Dorfman DM, Jinushi M, Umetsu SE, Butte MJ, Nagumo H, Chernova I, Zhu B, Sharpe AH, Ito S, Dranoff G, Kaplan GG, Casasnovas JM, Umetsu DT, Dekruyff RH, Freeman GJ. TIM-1 and TIM-4 glycoproteins bind phosphatidylserine and mediate uptake of apoptotic cells. Immunity. 2007;27(6):927-40. PMID 18082433.
  9. Butte MJ, Dodson B, Dioun A. Pentobarbital desensitization in a 3 month old child. Allergy and Asthma Proceedings, 2004 Jul-Aug; 25(4): 225-7. PMID 15510580.

Pre-2000 (Manish in PhD program in Fletterick Lab at UCSF)

  1. Butte MJ. Neurotrophic factor structures reveal clues to evolution, binding, specificity, and receptor activation (invited review article). Cell Mol Life Sci., 2001 Jul; 58(8): 1003-13. PMID 11529493.
  2. Butte MJ, Hwang PK, Mobley WC, Fletterick RJ. Crystal structure of neurotrophin-3 homodimer shows distinct regions are used to bind its receptors. Biochemistry, 1998 Dec 1; 37(48): 16846-52. PMID 9836577.
  3. Read D, Butte MJ. Dernburg AF, Frasch M, Kornberg TB. Functional studies of the BTB domain in the Drosophila GAGA and Mod(mdg4) proteins. Nucleic Acids Res., 2000 Oct 15; 28(20): 3864-70. PMID 11024164.

Pre-1995 (Manish in medical school at Brown)

  1. Bertram R, Butte MJ, Kiemel T, Sherman A. Topological and phenomenological classification of bursting oscillations. Bulletin Math. Biol., 1995 May; 57(3): 413-39. PMID 7728115.
  2. Butte MJ, Nguyen BX, Hutchison TJ, Wiggins JW, Ziegler JW. Pediatric myocardial infarction after racemic epinephrine administration. Pediatrics, 1999 Jul; 104(1): e9. PMID 10390295.